Healthcare data migration services

We help healthcare IT vendors, providers, payers, and researchers upgrade data environments through secure, seamless migrations. From compliance-driven use cases to modernizing legacy systems, we build tailored platforms and facilitate migration with open-source tools—unlocking your data for analytics, AI, and interoperability.

We provide end-to-end hospital data migration services

Target platform deployment

We either deploy an existing solution (warehouse, repository) or develop a custom, migration-ready environment that ensures performance, security, and seamless data access.

Data modeling and profiling

As a medical data migration company, we evaluate the structure and quality of your source data to create a model that aligns with your target system and meets regulatory standards.

Mapping and conversion

We map and clean your data, and align it with tailored terminologies such as SNOMED CT, LOINC, and ICD to ensure consistency, semantic clarity, and seamless use across diverse healthcare systems.

Migration execution

Using automated, secure pipelines, we efficiently move data, handling everything from patient records to registries, while maintaining full data lineage and compliance.

Testing

Our team validates the entire migration through automated and manual testing to ensure data completeness, accuracy, and usability before, during, and after deployment.

Management

For ongoing or repeatable migrations, we design traceable, automated workflows using Edenlab-tailored stacks, such as Dagster, Airbyte, and dbt. This approach ensures safer, more controlled data movement.

Case study

IT vendor

USA

Elation EHR – data migration to an FHIR-native platform for ONC compliance

Migrated a large-scale US-based EHR platform (used by 24,000+ clinicians) to HL7 FHIR without a complete system redesign. Edenlab implemented a high-performance FHIR backend using the Kodjin FHIR Server, enabling seamless interoperability while preserving legacy data structure, along with custom templates, SMART on FHIR support, and full ONC certification.

Case study

Healthcare provider network

USA

Data transfer from multiple EHRs to the Zoadigm FHIR analytics platform

Migrated siloed clinical and financial data into a unified FHIR-based semantic analytics platform. Built a scalable microservices architecture with Kodjin FHIR Server and ClickHouse to transform deeply nested EHR records into an interactive, queryable format. Enabled non-technical users to define complex patient cohorts, treatment paths, and value-based care models — unlocking actionable insights across the care continuum.

Custom medical data migration scenarios we excel in

Regulatory-driven FHIR migration

We help healthcare organizations and IT vendors adopt FHIR-native platforms to meet regulations and enable secure data exchange. Your original repositories stay intact and can run alongside without extra load.

Moving from legacy systems to modern data platforms

We migrate data from proprietary or outdated software to scalable, interoperable platforms — improving performance, governance, long-term data usability, and data exchange.

Consolidating data from multiple sources

We combine fragmented data into a centralized, well-structured repository, creating a single source of truth that simplifies access and strengthens data quality.

Feeding analytics-ready and AI-ready platforms

Our ELT pipelines move large volumes of data into modern analytics and AI environments, enabling insights at scale without overhauling existing systems.

Powering patient and provider applications with data

We deliver structured, reliable historical data to patient- and provider-facing applications — enabling smooth integration and ensuring data is ready for analytics and reporting.

Migrating large volumes of data in order to submit them to HIEs

We enable compliant, secure healthcare database migration to external systems like HIEs and national registries — aligning with required formats, privacy standards, and technical protocols.

We don’t just execute data migration — we build modern healthcare data platforms

We work with a variety of standards and technologies — including FHIR — to build secure, high-performance systems, turning common data limitations into strategic advantages.

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Challenges you can solve with our clinical data migration services

Scale high-volume data operations without downtime

We help you migrate healthcare data without disrupting performance — and enable future scalability with a modern architecture designed to grow with your data needs.

Break down data silos with unified data access capabilities

We normalize and map data across formats and systems, making it easier for teams and applications to access the right data at the right time, whether for clinical use, analytics, or reporting.

Reduce long-term storage and infrastructure costs

By migrating to scalable cloud or hybrid environments and cleaning up redundant or legacy data, we help you optimize resource usage while improving accessibility and performance.

Maintain accuracy and consistency throughout the pipeline

We apply validations, deduplication, terminology mapping, and quality checks at every process stage to ensure data consistency, completeness, and trustworthiness.

Establish reliable backups and recovery options

Legacy systems often lack robust disaster recovery and backup mechanisms. Our workflows are designed to fix this gap — enabling automated backups and reliable restore points to safeguard health data.

Achieve seamless integration into your ecosystem

We design your new environments to work with existing EHRs, apps, registries, and infrastructure, minimizing disruptions and ensuring system compatibility.

Stay compliant with data exchange regulations

We ensure your modern infrastructure aligns with healthcare data exchange standards like ONC and CMS — enabling structured, secure, and data transfer across systems and jurisdictions.

Enable continuous data flow, not just one-time moves

Beyond one-off migrations, we support ongoing data synchronization and real-time feeds, keeping all systems updated and aligned without manual effort.

Power your data migration for healthcare software with our analytics and integration expertise

Connect your migration journey with our core data & analytics services, powered by advanced healthcare integrations that ensure clean, consistent, and actionable data across systems.

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Key parameters in choosing your data migration strategy

By scope

Full migration

All data is moved from the old system to the new one in a single operation. This approach ensures nothing is left behind but requires thorough preparation and testing.

Partial migration

Only selected, critical datasets are transferred to the new system. It reduces risk and complexity but may require ongoing management of both old and new systems.

By execution approach

Big bang migration

All data is migrated at once during a planned downtime, resulting in an immediate switch to the new system. This is fast but carries a higher risk if issues arise.

Phased migration

Data is moved in stages, allowing for testing and validation after each phase. This minimizes risk and disruption but takes longer to complete.

Zero-downtime migration

Data is synchronized in real-time, so users experience no service interruption during the transition. This is ideal for 24/7 operations but requires advanced planning and tools.

By data transfer logic

One-time or periodic bulk transfer

Large batches of data are moved at scheduled intervals or just once. This is efficient for historical or less time-sensitive data.

Real-time stream

Data is continuously transferred as it changes, keeping both systems in sync. This is essential for platforms and applications needing immediate data consistency.

Data types we work with during migration

Administrative data

Patients
Healthcare professionals
Clinics and hospitals
Locations
Service catalogs

Clinical data

Medical conditions
Allergies
Immunizations
Procedures, hospital visits
Care plans, goals
Risk assessments

Diagnostics data

Lab test results
Medical imaging
Vital signs
Clinical observations
Diagnostic reports

Medication data

Prescriptions
Medication intake history
Medication dispensing records

Financial data

Insurance coverage details
Claims and billing documents
Payment transactions

Workflow data

Appointments and scheduling
Referrals and task management
Care coordination

Clinical reasoning

Clinical guidelines and rules
Quality metrics (eCQM)
Decision support logic

Medication reference

Drug catalogs and product definitions
Packaging information
Regulatory approvals and authorizations

Accelerate healthcare system data migration with Kodjin out-of-the-box products

Speed up implementation with ready-to-use components: a powerful data profiler for mapping and quality checks, a robust ELT pipeline builder, and a terminology service aligned with FHIR.

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Key considerations before starting your medical data transfer

Understand the full scope and purpose of your patient data migration

Define why the migration is needed — modernizing infrastructure, consolidating systems, or enabling new analytics capabilities. Map outsource and target systems, assess data volume and complexity, and determine if the migration is a one-time event or a recurring process.

Assess data quality, structure, and gaps early

Incomplete records, inconsistent formats, and legacy data structures often require remediation. Conduct profiling to identify anomalies, duplicates, or missing values. Plan for normalization and enrichment to meet the requirements of the target system.

Align with relevant healthcare standards and data models

Healthcare data relies on structured formats and vocabularies. Ensure alignment with standards like HL7 FHIR, CDA, ICD, LOINC, and SNOMED CT. When migrating to modern platforms, plan for mapping and converting legacy codes into standardized formats.

Plan for data privacy, access control, and auditability

Migration involves sensitive health information. Address compliance with HIPAA, GDPR, or national laws, ensuring encryption in transit and at rest, proper access controls, and audit trails. Include consent handling and data minimization strategies if needed.

Support system interoperability and long-term maintainability

If the migration feeds into or out of multiple systems, such as EHRs, analytics platforms, or registries, ensure semantic and structural compatibility. Design reusable pipelines and use open tools (like Dagster, dbt, and Airbyte) to avoid vendor lock-in.

Account for downtime, rollback, and data validation

Migration can affect mission-critical systems. Plan for minimal service disruption, define rollback mechanisms and perform extensive testing before cutover. Validate that data integrity, relationships, and completeness are preserved in the new environment.

Prepare for post-migration reconciliation and monitoring

After transferring healthcare data, ensure ongoing synchronization (if needed), fix edge-case issues and compare pre/post-datasets. Use monitoring tools to detect anomalies and ensure the platform continues to deliver clean, actionable, and compliant healthcare data.

Let us handle your data migration challenges

Hire healthcare data migration experts to handle the complexities for you — so your team can stay focused on delivering better healthcare outcomes.

Who benefits from our medical records migration services

Product companies

We help digital health product teams modernize their platforms and meet ONC compliance requirements without disrupting existing workflows. From merging legacy data to supporting architecture changes and interoperability goals, we ensure secure, consistent migrations.

Governments, data exchange facilitators

We support government-led and nationwide health IT programs by migrating large volumes of legacy data into standardized, interoperable formats. Our work often includes FHIR transformations, deduplication, and the setup of audit-ready data flows to support secure data exchange at scale.

Providers and Payers

Hospitals, clinics, and insurance providers rely on us to migrate patient and claims data safely and in line with healthcare standards. We help modernize outdated systems, support transitions to HL7 FHIR, and ensure that sensitive data remains protected throughout the process.

Researchers

As a healthcare data migration company, we enable access to clean, well-structured, and de-identified datasets for academic and clinical research. This involves migrating data into secure analytics environments, applying pseudonymization or aggregation techniques, and ensuring ethical data access policies are in place.

Technologies we work with

Source Systems / Databases

Infrastructure / DevOps

Languages & Frameworks

Data Orchestration & Transformation (ETL/ELT)

Testing & QA

Why Edenlab is a reliable healthcare data transfer services provider

Migration strategies built for healthcare complexity

We provide healthcare data migration services tailored to the structure, security, and interoperability needs of each system. Whether you’re moving to FHIR, consolidating legacy systems, or enabling real-time exchange, we ensure a HIPAA-compliant, secure transition every step of the way.

End-to-end execution with seamless ecosystem integration

Our team oversees the whole migration process, from source analysis and mapping to validation and go-live, assuring seamless interaction with EHRs, data warehouses, analytics platforms, and external systems such as HIEs or registries. We minimize disruptions and maintain data continuity.

Fast, cost-effective delivery from day one

Thanks to our modular architecture and proven data migration components — including profilers, ELT pipelines, and terminology services — we accelerate implementation without compromising quality. You stay in control, avoid lock-in, and gain a flexible foundation for future data initiatives.

See how we work

Custom data-driven solutions we design and implement

HIE development

Edenlab builds secure, high-performance Health Information Exchange (HIE) systems that enable smooth data exchange between healthcare providers, supporting better coordination, continuity of care, and improved outcomes.

EHR development

We create flexible and scalable Electronic Health Record (EHR) systems that optimize healthcare workflows, enhance the precision of medical data, and support high-quality patient care through effective digital documentation.

CDSS development

We deliver Clinical Decision Support Systems (CDSS) that empower healthcare providers with data-driven insights and real-time alerts, helping them make more informed decisions and boosting patient safety.

Clinical data repository development

Our team builds Clinical Data Repositories (CDRs) that centralize patient data, enabling healthcare organizations to store, manage, and access critical clinical information efficiently and securely.

Healthcare data migration services

We provide end-to-end hospital data migration services

Target platform deployment

Data modeling and profiling

Mapping and conversion

Migration execution

Testing

Management

Elation EHR – data migration to an FHIR-native platform for ONC compliance

Data transfer from multiple EHRs to the Zoadigm FHIR analytics platform

Custom medical data migration scenarios we excel in

Regulatory-driven FHIR migration

Moving from legacy systems to modern data platforms

Consolidating data from multiple sources

Feeding analytics-ready and AI-ready platforms

Powering patient and provider applications with data

Migrating large volumes of data in order to submit them to HIEs

Challenges you can solve with our clinical data migration services

Scale high-volume data operations without downtime

Break down data silos with unified data access capabilities

Reduce long-term storage and infrastructure costs

Maintain accuracy and consistency throughout the pipeline

Establish reliable backups and recovery options

Achieve seamless integration into your ecosystem

Stay compliant with data exchange regulations

Enable continuous data flow, not just one-time moves

Key parameters in choosing your data migration strategy

Full migration

Partial migration

Big bang migration

Phased migration

Zero-downtime migration

One-time or periodic bulk transfer

Real-time stream

Data types we work with during migration

Key considerations before starting your medical data transfer

Understand the full scope and purpose of your patient data migration

Assess data quality, structure, and gaps early

Align with relevant healthcare standards and data models

Plan for data privacy, access control, and auditability

Support system interoperability and long-term maintainability

Account for downtime, rollback, and data validation

Prepare for post-migration reconciliation and monitoring

Who benefits from our medical records migration services

Product companies

Governments, data exchange facilitators

Providers and Payers

Researchers

Technologies we work with

Why Edenlab is a reliable healthcare data transfer services provider

Migration strategies built for healthcare complexity

End-to-end execution with seamless ecosystem integration

Fast, cost-effective delivery from day one

Custom data-driven solutions we design and implement

HIE development

EHR development

CDSS development

Clinical data repository development

Let’s talk about your goals